Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773755

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773755


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M382Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 5.4279 0.0000
2 ENSG00000170421 KRT8 keratin 8 4.7116 0.0000
3 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 4.6782 0.0000
4 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 4.6751 0.0000
5 ENSG00000111057 KRT18 keratin 18 4.5448 0.0000
6 ENSG00000245667 novel transcript 4.4658 0.0000
7 ENSG00000232573 RPL3P4 ribosomal protein L3 pseudogene 4 4.4425 0.0000
8 ENSG00000234648 pseudogene similar to part of ribosomal protein L3 (RPL3) 4.4425 0.0000
9 ENSG00000207642 MIR571 microRNA 571 4.3923 0.0000
10 ENSG00000250321 pseudogene similar to part of ribosomal protein S17 (RPS17) 4.3923 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000118420 UBE3D ubiquitin protein ligase E3D -1.9498 0.0000
63172 ENSG00000224700 novel transcript -1.9498 0.0000
63171 ENSG00000274749 KRTAP7-1 keratin associated protein 7-1 -1.9491 0.0000
63170 ENSG00000170367 CST5 cystatin D -1.9458 0.0000
63169 ENSG00000270434 ataxin 1-like (ATXN1L) pseudogene -1.9450 0.0000
63168 ENSG00000168135 KCNJ4 potassium inwardly rectifying channel subfamily J member 4 -1.9437 0.0000
63167 ENSG00000258388 PPT2-EGFL8 PPT2-EGFL8 readthrough (NMD candidate) -1.9427 0.0000
63166 ENSG00000221988 PPT2 palmitoyl-protein thioesterase 2 -1.9427 0.0000
63165 ENSG00000204314 PRRT1 proline rich transmembrane protein 1 -1.9427 0.0000
63164 ENSG00000206785 SNORA15B-2 small nucleolar RNA, H/ACA box 15B-2 -1.9421 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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