Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773756

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773756


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M383Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 3.5834 0.0000
2 ENSG00000284135 MIR3654 microRNA 3654 3.3627 0.0000
3 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 3.2152 0.0000
4 ENSG00000235001 EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 2.6227 0.0000
5 ENSG00000202283 NA 2.3219 0.0010
6 ENSG00000184492 FOXD4L1 forkhead box D4 like 1 2.0000 0.0056
7 ENSG00000253776 novel transcript 2.0000 0.0056
8 ENSG00000276156 ribonuclease P/MRP 40kDa subunit (RPP40) pseudogene 2.0000 0.0000
9 ENSG00000240792 novel transcript 1.9914 0.0000
10 ENSG00000218426 60S ribosomal protein L27a (RPL27A) pseudogene 1.9826 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000214842 RAD51AP2 RAD51 associated protein 2 -1.9909 0.0000
63172 ENSG00000250205 YWHAEP4 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 4 -1.9908 0.0000
63171 ENSG00000230432 novel transcript -1.9908 0.0000
63170 ENSG00000132341 RAN RAN, member RAS oncogene family -1.9907 0.0000
63169 ENSG00000226359 ACTG1P24 actin gamma 1 pseudogene 24 -1.9905 0.0000
63168 ENSG00000241679 novel transcript -1.9903 0.0000
63167 ENSG00000272717 novel transcript, antisense to SETD7 -1.9901 0.0000
63166 ENSG00000099624 ATP5F1D ATP synthase F1 subunit delta -1.9900 0.0000
63165 ENSG00000213563 C8orf82 chromosome 8 open reading frame 82 -1.9898 0.0000
63164 ENSG00000168748 CA7 carbonic anhydrase 7 -1.9887 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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