Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773757

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773757


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M384Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235605 ribosomal protein S15 (RPS15) pseudogene 3.4560 0.0000
2 ENSG00000238041 TMEM230P2 TMEM230 pseuogene 2 3.1699 0.0000
3 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 3.0346 0.0000
4 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 3.0227 0.0000
5 ENSG00000251051 ELL2P2 elongation factor for RNA polymerase II 2 pseudogene 2 3.0000 0.0000
6 ENSG00000227657 SERPINA7P1 serpin family A member 7 pseudogene 1 2.8074 0.0000
7 ENSG00000248613 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 2.8074 0.0000
8 ENSG00000258708 SLC25A21-AS1 SLC25A21 antisense RNA 1 2.7549 0.0000
9 ENSG00000218426 60S ribosomal protein L27a (RPL27A) pseudogene 2.6964 0.0000
10 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 2.6227 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000266818 zinc finger pseudogene -2.3219 0.0097
63172 ENSG00000264930 zinc finger, MYM-type 4 (ZMYM4) pseudogene -2.3219 1.0000
63171 ENSG00000261689 AGGF1P4 angiogenic factor with G-patch and FHA domains 1 pseudogene 4 -2.3219 0.0919
63170 ENSG00000260151 LINC02673 long intergenic non-protein coding RNA 2673 -2.3219 0.3666
63169 ENSG00000258641 OR4T1P olfactory receptor family 4 subfamily T member 1 pseudogene -2.3219 0.0246
63168 ENSG00000258324 chromosome 10 open reading frame 57 (C10orf57) pseudogene -2.3219 1.0000
63167 ENSG00000249842 novel transcript -2.3219 1.0000
63166 ENSG00000243633 RN7SL542P RNA, 7SL, cytoplasmic 542, pseudogene -2.3219 0.2388
63165 ENSG00000235421 novel pseudogene similar to part of integrator complex subunit 4 INTS4 -2.3219 0.3666
63164 ENSG00000231901 novel transcript -2.3219 0.3666

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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