Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773758

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773758


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M385Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214064 RPL6P5 ribosomal protein L6 pseudogene 5 3.3219 0.0000
2 ENSG00000270665 HNRNPA1P67 heterogeneous nuclear ribonucleoprotein A1 pseudogene 67 3.1699 0.0000
3 ENSG00000271172 novel transcript 3.1699 0.0000
4 ENSG00000251585 ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene 3.0000 0.0000
5 ENSG00000261635 tropomyosin 3 (TPM3) pseudogene 3.0000 0.0000
6 ENSG00000270308 TEX101P1 TEX101 pseudogene 1 3.0000 0.0000
7 ENSG00000278011 novel transcript 2.9886 0.0000
8 ENSG00000207325 RNY1P4 RNY1 pseudogene 4 2.8074 0.0000
9 ENSG00000240974 RPS27AP10 RPS27A pseudogene 10 2.6855 0.0000
10 ENSG00000207289 RNU6-1235P RNA, U6 small nuclear 1235, pseudogene 2.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000128965 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 -2.3713 0.0000
63172 ENSG00000197046 SIGLEC15 sialic acid binding Ig like lectin 15 -2.3712 0.0000
63171 ENSG00000273004 novel transcript -2.3707 0.0000
63170 ENSG00000276855 novel transcript -2.3706 0.0000
63169 ENSG00000164087 POC1A POC1 centriolar protein A -2.3702 0.0000
63168 ENSG00000070388 FGF22 fibroblast growth factor 22 -2.3701 0.0000
63167 ENSG00000124391 IL17C interleukin 17C -2.3700 0.0000
63166 ENSG00000230314 ELOVL2-AS1 ELOVL2 antisense RNA 1 -2.3696 0.0000
63165 ENSG00000259405 ISCA1P4 iron-sulfur cluster assembly 1 pseudogene 4 -2.3691 0.0000
63164 ENSG00000166963 MAP1A microtubule associated protein 1A -2.3687 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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