Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773759

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773759


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M386Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257864 IQ motif containing F1 (IQCF1) pseudogene 3.1699 0.0000
2 ENSG00000251127 novel transcript 3.0000 0.0000
3 ENSG00000278580 piggyBac transposable element derived 4 (PGBD4) pseudogene 2.8074 0.0000
4 ENSG00000260838 novel transcript 2.6230 0.0000
5 ENSG00000207632 MIR588 microRNA 588 2.5850 0.0001
6 ENSG00000242009 novel transcript 2.5850 0.0001
7 ENSG00000280185 tec 2.5850 0.0000
8 ENSG00000262384 proteasome (prosome, macropain) 26S subunit, ATPase, 6 (PSMC6) pseudogene 2.5411 0.0000
9 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 2.4986 0.0000
10 ENSG00000136546 SCN7A sodium voltage-gated channel alpha subunit 7 2.4581 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000232998 VPS13A-AS1 VPS13A antisense RNA 1 -2.2377 0.0000
63172 ENSG00000253390 novel transcript -2.2377 0.0000
63171 ENSG00000283529 somatomedin B and thrombospondin type 1 domain containing (SBSPON) pseudogene -2.2373 0.0000
63170 ENSG00000158406 H4C8 H4 clustered histone 8 -2.2371 0.0000
63169 ENSG00000207024 Y RNA -2.2368 0.0000
63168 ENSG00000269427 novel transcript, antisense C19orf42 -2.2367 0.0000
63167 ENSG00000148488 ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 -2.2363 0.0000
63166 ENSG00000254326 IGHV7-27 immunoglobulin heavy variable 7-27 (pseudogene) -2.2362 0.0000
63165 ENSG00000229607 novel transcript -2.2359 0.0000
63164 ENSG00000284346 MIR940 microRNA 940 -2.2357 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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