Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773760

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773760


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M387Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230173 LINC01790 long intergenic non-protein coding RNA 1790 2.8074 0.0000
2 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.5147 0.0000
3 ENSG00000241022 NIPA2P2 NIPA2 pseudogene 2 2.3219 0.0007
4 ENSG00000265484 novel transcript 2.3219 0.0000
5 ENSG00000276828 DnaJ (Hsp40) homolog, subfamily B, member 5 (DNAJB5) pseudogene 2.3219 0.0007
6 ENSG00000177151 OR2T35 olfactory receptor family 2 subfamily T member 35 2.3208 0.0000
7 ENSG00000272375 novel transcript 2.2288 0.0000
8 ENSG00000278989 novel transcript 2.1872 0.0000
9 ENSG00000226798 putatitive novel transcript 2.1128 0.0000
10 ENSG00000230614 DYNLL1P7 dynein light chain LC8-type 1 pseudogene 7 2.0113 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000239462 novel transcript -2.3227 0.0000
63172 ENSG00000172985 SH3RF3 SH3 domain containing ring finger 3 -2.3227 0.0000
63171 ENSG00000276138 U6 spliceosomal RNA -2.3219 0.3695
63170 ENSG00000273940 RN7SL722P RNA, 7SL, cytoplasmic 722, pseudogene -2.3219 1.0000
63169 ENSG00000255162 ankyrin repeat domain 33B (ANKRD33B ) pseudogene -2.3219 0.0925
63168 ENSG00000251291 LINC02462 long intergenic non-protein coding RNA 2462 -2.3219 1.0000
63167 ENSG00000250858 IGBP1P5 immunoglobulin (CD79A) binding protein 1 pseudogene 5 -2.3219 0.3695
63165 ENSG00000226860 RBX1P1 RBX1 pseudogene 1 -2.3219 1.0000
63164 ENSG00000226767 novel pseudogene -2.3219 0.0002
10 ENSG00000230614 DYNLL1P7 dynein light chain LC8-type 1 pseudogene 7 2.0113 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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