Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773761

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773761


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M388Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257042 novel transcript, antisense to PTHLH 2.8074 0.0000
2 ENSG00000222357 RNU2-20P RNA, U2 small nuclear 20, pseudogene 2.3219 0.0000
3 ENSG00000222741 RNA5SP229 RNA, 5S ribosomal pseudogene 229 2.3219 0.0002
4 ENSG00000231300 EZH2P1 enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1 2.3219 0.0002
5 ENSG00000248262 novel transcript 2.3219 0.0000
6 ENSG00000252073 RNU6-947P RNA, U6 small nuclear 947, pseudogene 2.3219 0.0000
7 ENSG00000261129 novel transcript 2.3219 0.0002
8 ENSG00000273900 novel pseudogene 2.3219 0.0002
9 ENSG00000223842 novel transcript 2.2925 0.0000
10 ENSG00000185962 LCE3A late cornified envelope 3A 2.0000 0.0014

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000276573 novel transcript, sense intronic to RAP2A -1.8551 0.0000
63172 ENSG00000230508 RPL19P21 ribosomal protein L19 pseudogene 21 -1.8547 0.0000
63171 ENSG00000261444 MPV17 mitochondrial membrane protein-like (MPV17L) pseudogene -1.8546 0.0000
63170 ENSG00000189431 RASSF10 Ras association domain family member 10 -1.8545 0.0000
63169 ENSG00000140941 MAP1LC3B microtubule associated protein 1 light chain 3 beta -1.8545 0.0000
63168 ENSG00000102172 SMS spermine synthase -1.8542 0.0000
63167 ENSG00000279692 TEC -1.8533 0.0000
63166 ENSG00000243510 RN7SL111P RNA, 7SL, cytoplasmic 111, pseudogene -1.8529 0.0000
63165 ENSG00000164972 C9orf24 chromosome 9 open reading frame 24 -1.8524 0.0000
63164 ENSG00000231199 MTND5P19 MT-ND5 pseudogene 19 -1.8523 0.0035

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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