Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773762

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773762


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M389Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231158 PTP4A1P1 PTP4A1 pseudogene 1 3.1699 0.0000
2 ENSG00000261581 HERC2P11 hect domain and RLD 2 pseudogene 11 3.1699 0.0000
3 ENSG00000213787 RPL7AP38 ribosomal protein L7a pseudogene 38 3.0000 0.0000
4 ENSG00000248528 LINC02058 long intergenic non-protein coding RNA 2058 3.0000 0.0000
5 ENSG00000273176 novel transcript, antisense to TOM1 2.8774 0.0000
6 ENSG00000215482 CALM2P3 calmodulin 2 pseudogene 3 2.5850 0.0000
7 ENSG00000235256 FKBP4P7 FKBP prolyl isomerase 4 pseudogene 7 2.5850 0.0000
8 ENSG00000235275 KRT18P16 keratin 18 pseudogene 16 2.5850 0.0000
9 ENSG00000254049 NRG1-IT3 NRG1 intronic transcript 3 2.5850 0.0000
10 ENSG00000258506 ribosomal protein L13a (RPL13A) pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000197860 SGTB small glutamine rich tetratricopeptide repeat containing beta -2.2671 0.0000
63172 ENSG00000175879 HOXD8 homeobox D8 -2.2670 0.0000
63171 ENSG00000256913 plakophilin 2 (PKP2) pseudogene -2.2666 0.0000
63170 ENSG00000201440 RNA5SP515 RNA, 5S ribosomal pseudogene 515 -2.2665 0.0000
63169 ENSG00000128645 HOXD1 homeobox D1 -2.2658 0.0000
63168 ENSG00000101057 MYBL2 MYB proto-oncogene like 2 -2.2651 0.0000
63167 ENSG00000256350 pseudogene similar to part of anoctamin 10 (ANO10) -2.2650 0.0000
63166 ENSG00000278546 novel transcript -2.2645 0.0000
63165 ENSG00000227740 LINC02803 long intergenic non-protein coding RNA 2803 -2.2642 0.0172
63164 ENSG00000267062 novel transcript, antisense to PRDX2 -2.2642 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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