Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773763

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773763


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M390Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241103 RPL35AP11 ribosomal protein L35a pseudogene 11 3.0566 0.0000
2 ENSG00000235812 ADAM21P1 ADAM metallopeptidase domain 21 pseudogene 1 3.0000 0.0005
3 ENSG00000244717 RPS27P14 ribosomal protein S27 pseudogene 14 3.0000 0.0000
4 ENSG00000206924 RNU6-689P RNA, U6 small nuclear 689, pseudogene 2.8074 0.0014
5 ENSG00000217160 MTCO2P31 MT-CO2 pseudogene 31 2.8074 0.0014
6 ENSG00000250500 eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa (EIF2S3) pseudogene 2.8074 0.0000
7 ENSG00000252535 RNA5SP254 RNA, 5S ribosomal pseudogene 254 2.8074 0.0014
8 ENSG00000259769 ADAM metallopeptidase domain 22 (ADAM22) pseudogene 2.8074 0.0014
9 ENSG00000275197 novel transcript, antisense to KRAS 2.8074 0.0000
10 ENSG00000279376 tec 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000223723 TFDP1P2 TFDP1 pseudogene 2 -1.6498 0.0000
63172 ENSG00000258413 novel transcript -1.6495 0.0000
63171 ENSG00000145022 TCTA T cell leukemia translocation altered -1.6495 0.0000
63170 ENSG00000280057 TEC -1.6490 0.0000
63169 ENSG00000204103 MAFB MAF bZIP transcription factor B -1.6487 0.0000
63168 ENSG00000158019 BABAM2 BRISC and BRCA1 A complex member 2 -1.6483 0.0000
63167 ENSG00000239389 PCDHA13 protocadherin alpha 13 -1.6479 0.0000
63166 ENSG00000266709 novel transcript -1.6474 0.0000
63165 ENSG00000223298 RNY3P8 RNY3 pseudogene 8 -1.6468 0.0000
63164 ENSG00000224592 MIR3659HG MIR3659 host gene -1.6467 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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