Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773764

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773764


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M391Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230683 DDTP1 D-dopachrome tautomerase pseudogene 1 3.0000 0.0000
2 ENSG00000264246 chromosome 5 open reading frame 43 (C5orf43) pseudogene 2.9534 0.0000
3 ENSG00000186105 LRRC70 leucine rich repeat containing 70 2.8074 0.0000
4 ENSG00000235808 MYL6P2 myosin light chain 6 pseudogene 2 2.8074 0.0000
5 ENSG00000248346 novel transcript 2.8074 0.0000
6 ENSG00000251511 novel transcript 2.8074 0.0000
7 ENSG00000196772 OR14A16 olfactory receptor family 14 subfamily A member 16 2.5850 0.0000
8 ENSG00000213613 RPL11P3 ribosomal protein L11 pseudogene 3 2.5850 0.0000
9 ENSG00000221455 Small nucleolar RNA U3 2.5850 0.0000
10 ENSG00000235743 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000234732 RPEP5 ribulose-5-phosphate-3-epimerase pseudogene 5 -2.0000 1.0000
63172 ENSG00000233802 TRIM49D2 tripartite motif containing 49D2 -2.0000 1.0000
63171 ENSG00000233259 FABP3P2 fatty acid binding protein 3 pseudogene 2 -2.0000 1.0000
63170 ENSG00000231390 SNX18P8 sorting nexin 18 pseudogene 8 -2.0000 1.0000
63169 ENSG00000230343 pseudogene similar to part of a tripartite motif-containing family protein -2.0000 0.6142
63168 ENSG00000230196 DDX43P3 DEAD-box helicase 43 pseudogene 3 -2.0000 1.0000
63167 ENSG00000227679 ring finger protein 18 (RNF18) pseudogene -2.0000 1.0000
63166 ENSG00000227447 XGY1 XG pseudogene, Y-linked 1 -2.0000 1.0000
63165 ENSG00000227234 SPANXB1 SPANX family member B1 -2.0000 1.0000
63164 ENSG00000227170 novel transcript -2.0000 0.6142

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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