Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773765

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773765


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M392Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202398 RNU6-61P RNA, U6 small nuclear 61, pseudogene 2.8074 0.0000
2 ENSG00000230847 OCLNP1 OCLN pseudogene 1 2.5850 0.0001
3 ENSG00000234269 phosphoribosyl pyrophosphate synthetase 2 (PRPS2) pseudogene 2.5850 0.0001
4 ENSG00000234748 ADP-ribosylation factor-like 5 (ARL5) pseudogene 2.5850 0.0001
5 ENSG00000249111 novel transcript 2.5850 0.0001
7 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.5705 0.0000
8 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.5695 0.0000
9 ENSG00000253722 novel transcript 2.5572 0.0000
10 ENSG00000178645 C10orf53 chromosome 10 open reading frame 53 2.5000 0.0000
63164 ENSG00000261934 PCDHGA9 protocadherin gamma subfamily A, 9 -2.3212 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000226962 RAC1P6 Rac family small GTPase 1 pseudogene 6 -2.3219 1.0000
63172 ENSG00000224683 RPL36AP29 ribosomal protein L36a pseudogene 29 -2.3219 1.0000
63171 ENSG00000218483 ubiquinol-cytochrome c reductase core protein II (UQCRC2) -2.3219 1.0000
63170 ENSG00000217372 TUBB4BP7 TUBB4B pseudogene 7 -2.3219 0.1517
63169 ENSG00000207156 RNU6-505P RNA, U6 small nuclear 505, pseudogene -2.3219 1.0000
63168 ENSG00000202191 SNORD113-1 small nucleolar RNA, C/D box 113-1 -2.3219 0.2360
63167 ENSG00000201648 RNU4-91P RNA, U4 small nuclear 91, pseudogene -2.3219 0.2360
63166 ENSG00000168497 CAVIN2 caveolae associated protein 2 -2.3219 1.0000
63165 ENSG00000233198 RNF224 ring finger protein 224 -2.3213 0.0000
63164 ENSG00000261934 PCDHGA9 protocadherin gamma subfamily A, 9 -2.3212 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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