Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773766

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773766


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M393Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200879 SNORD14E small nucleolar RNA, C/D box 14E 4.2297 0.0000
2 ENSG00000229060 novel pseudogene 3.9069 0.0000
3 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 3.8971 0.0000
4 ENSG00000278217 NA 3.8971 0.0000
5 ENSG00000265401 novel transcript 3.7987 0.0000
7 ENSG00000217889 KRT18P48 keratin 18 pseudogene 48 3.7845 0.0000
9 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 3.7495 0.0000
10 ENSG00000075624 ACTB actin beta 3.7169 0.0000
63164 ENSG00000282697 chromodomain protein, Y chromosome-like (CDYL) pseudogene -1.0000 0.0004
63165 ENSG00000282718 novel transcript -1.0000 0.1209

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000282904 novel transcript -1.0000 0.2445
63172 ENSG00000282882 novel transcript -1.0000 0.0296
63171 ENSG00000282881 TMEM275 transmembrane protein 275 -1.0000 0.0000
63170 ENSG00000282876 novel transcript -1.0000 0.0296
63169 ENSG00000282870 FRG1DP FSHD region gene 1 family member D, pseudogene -1.0000 0.0002
63168 ENSG00000282850 RHOXF1P2 Rhox homeobox family member 1 pseudogene 2 -1.0000 0.0072
63167 ENSG00000282826 FRG1CP FSHD region gene 1 family member C, pseudogene -1.0000 0.0000
63166 ENSG00000282780 TRBJ1-6 T cell receptor beta joining 1-6 -1.0000 0.4945
63165 ENSG00000282718 novel transcript -1.0000 0.1209
63164 ENSG00000282697 chromodomain protein, Y chromosome-like (CDYL) pseudogene -1.0000 0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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