Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773767

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773767


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M394Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254202 novel transcript 4.3219 0.0000
2 ENSG00000279635 tec 3.7004 0.0000
3 ENSG00000229600 novel transcript 3.0000 0.0000
4 ENSG00000199515 Y RNA 2.9203 0.0000
5 ENSG00000213512 GBP7 guanylate binding protein 7 2.8074 0.0000
6 ENSG00000227240 novel transcript 2.8074 0.0000
7 ENSG00000275647 zinc finger protein 93 (ZNF93) pseudogene 2.8074 0.0000
8 ENSG00000249752 novel transcript 2.7925 0.0000
9 ENSG00000229608 GOLGA2P4 GOLGA2 pseudogene 4 2.6634 0.0000
10 ENSG00000234009 RPL5P34 ribosomal protein L5 pseudogene 34 2.6634 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000125878 TCF15 transcription factor 15 -2.5388 0.0000
63172 ENSG00000231453 LINC01305 long intergenic non-protein coding RNA 1305 -2.5385 0.0000
63171 ENSG00000182179 UBA7 ubiquitin like modifier activating enzyme 7 -2.5384 0.0000
63170 ENSG00000283480 novel transcript, antisense to SOX4 -2.5378 0.0000
63169 ENSG00000053328 METTL24 methyltransferase like 24 -2.5372 0.0000
63168 ENSG00000228143 pseudogene similar to part of constitutive photomorphogenic protein, COP1 -2.5371 0.0014
63167 ENSG00000259804 novel transcript, antisense to CTCF -2.5368 0.0000
63166 ENSG00000251273 LINC02228 long intergenic non-protein coding RNA 2228 -2.5368 0.0000
63165 ENSG00000101850 GPR143 G protein-coupled receptor 143 -2.5362 0.0000
63164 ENSG00000102805 CLN5 CLN5 intracellular trafficking protein -2.5361 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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