Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773768

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773768


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M395Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248927 novel transcript 3.0000 0.0000
2 ENSG00000234767 LINC01052 long intergenic non-protein coding RNA 1052 2.8074 0.0000
3 ENSG00000270753 phosphoribosyl pyrophosphate synthetase 1-like 1, pseudogene 2.7709 0.0000
4 ENSG00000235450 novel transcript 2.5850 0.0001
5 ENSG00000241018 RCC2P5 regulator of chromosome condensation 2 pseudogene 5 2.5850 0.0000
6 ENSG00000255960 F-box only protein 3 (FBXO3) pseudogene 2.5850 0.0001
7 ENSG00000263616 RN7SL178P RNA, 7SL, cytoplasmic 178, pseudogene 2.5850 0.0000
8 ENSG00000242120 MDFIC2 MyoD family inhibitor domain containing 2 2.5229 0.0000
9 ENSG00000250670 novel transcript 2.5192 0.0000
10 ENSG00000229728 novel transcript 2.4797 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000261449 novel transcript, antisense to AP3M2 -2.2541 0.0000
63172 ENSG00000246339 EXTL3-AS1 EXTL3 antisense RNA 1 -2.2539 0.0000
63171 ENSG00000280414 novel transcript -2.2537 0.0000
63170 ENSG00000264589 MAPT-AS1 MAPT antisense RNA 1 -2.2533 0.0000
63168 ENSG00000236869 ZKSCAN7-AS1 ZKSCAN7 ZNF cluster antisense RNA 1 -2.2523 0.0000
63167 ENSG00000164543 STK17A serine/threonine kinase 17a -2.2521 0.0000
63166 ENSG00000108960 MMD monocyte to macrophage differentiation associated -2.2519 0.0000
63165 ENSG00000197860 SGTB small glutamine rich tetratricopeptide repeat containing beta -2.2509 0.0000
63164 ENSG00000234473 ZNF101P2 zinc finger protein 101 pseudogene 2 -2.2507 0.0000
10 ENSG00000229728 novel transcript 2.4797 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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