Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773770

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773770


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M397Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000174448 STARD6 StAR related lipid transfer domain containing 6 2.8774 0.0000
2 ENSG00000206698 RNU1-73P RNA, U1 small nuclear 73, pseudogene 2.3219 0.0000
3 ENSG00000222313 RN7SKP267 RN7SK pseudogene 267 2.3219 0.0002
4 ENSG00000226213 UBQLN4P2 ubiquilin 4 pseudogene 2 2.3219 0.0000
5 ENSG00000271385 transmembrane protein 230 (TMEM230) pseudogene 2.3219 0.0000
6 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.1246 0.0000
7 ENSG00000235552 RPL6P27 ribosomal protein L6 pseudogene 27 2.1207 0.0000
8 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1141 0.0000
9 ENSG00000276945 protocadherin 19 (PCDH19) pseudogene 2.0728 0.0000
10 ENSG00000227676 LINC01068 long intergenic non-protein coding RNA 1068 2.0572 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000284258 MIR8085 microRNA 8085 -2.1052 0.0000
63172 ENSG00000186994 KANK3 KN motif and ankyrin repeat domains 3 -2.1049 0.0000
63171 ENSG00000185697 MYBL1 MYB proto-oncogene like 1 -2.1049 0.0000
63170 ENSG00000188986 NELFB negative elongation factor complex member B -2.1049 0.0000
63169 ENSG00000148154 UGCG UDP-glucose ceramide glucosyltransferase -2.1047 0.0000
63168 ENSG00000198780 FAM169A family with sequence similarity 169 member A -2.1044 0.0000
63167 ENSG00000172818 OVOL1 ovo like transcriptional repressor 1 -2.1040 0.0000
63166 ENSG00000260293 novel transcript, intronic to TBC1D24 -2.1040 0.0000
63165 ENSG00000164938 TP53INP1 tumor protein p53 inducible nuclear protein 1 -2.1038 0.0000
63164 ENSG00000177697 CD151 CD151 molecule (Raph blood group) -2.1034 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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