Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773771

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773771


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M398Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206931 RNU6-1042P RNA, U6 small nuclear 1042, pseudogene 3.2076 0.0000
2 ENSG00000227134 OTX2P2 OTX2 pseudogene 2 3.1699 0.0000
3 ENSG00000227692 MED28P3 mediator complex subunit 28 pseudogene 3 3.0000 0.0000
4 ENSG00000233359 novel transcript 3.0000 0.0000
5 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.9760 0.0000
6 ENSG00000236185 HNRNPDLP3 HNRNPDL pseudogene 3 2.9037 0.0000
7 ENSG00000186119 OR5D18 olfactory receptor family 5 subfamily D member 18 2.8074 0.0000
8 ENSG00000255196 OR4A17P olfactory receptor family 4 subfamily A member 17 pseudogene 2.8074 0.0000
9 ENSG00000256361 glycine cleavage system protein H (aminomethyl carrier) (GCSH) 2.8074 0.0000
10 ENSG00000279395 OR5L1 olfactory receptor family 5 subfamily L member 1 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000275263 novel transcript -2.3913 0.0000
63172 ENSG00000227598 novel transcript -2.3906 0.0000
63171 ENSG00000278188 U6 spliceosomal RNA -2.3906 0.0000
63170 ENSG00000163348 PYGO2 pygopus family PHD finger 2 -2.3902 0.0000
63169 ENSG00000227547 OR4A2P olfactory receptor family 4 subfamily A member 2 pseudogene -2.3900 0.1443
63168 ENSG00000227121 LINC02672 long intergenic non-protein coding RNA 2672 -2.3900 0.1443
63167 ENSG00000218187 transducin (beta)-like 1 X-linked receptor 1 (TBL1XR1) pseudogene -2.3900 0.1471
63166 ENSG00000197774 EME2 essential meiotic structure-specific endonuclease subunit 2 -2.3893 0.0000
63165 ENSG00000167536 DHRS13 dehydrogenase/reductase 13 -2.3890 0.0000
63164 ENSG00000117525 F3 coagulation factor III, tissue factor -2.3885 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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