Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773772

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773772


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M399Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 2.8074 0.0000
2 ENSG00000270074 novel transcript 2.8074 0.0000
3 ENSG00000277684 novel transcript, antisense to RB1 2.7430 0.0000
4 ENSG00000273035 novel transcript, sense intronic to MAP4K3 2.6462 0.0000
5 ENSG00000230435 novel transcript 2.6396 0.0000
6 ENSG00000199575 SNORD114-1 small nucleolar RNA, C/D box 114-1 2.5850 0.0002
7 ENSG00000200823 SNORD114-2 small nucleolar RNA, C/D box 114-2 2.5850 0.0002
8 ENSG00000242635 RPS14P7 ribosomal protein S14 pseudogene 7 2.5850 0.0002
9 ENSG00000236243 RPL6P29 ribosomal protein L6 pseudogene 29 2.4534 0.0000
10 ENSG00000214190 RNF152P1 ring finger protein 152 pseudogene 1 2.4318 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000239792 CDRT15P5 CDRT15 pseudogene 5 -2.2200 0.0000
63172 ENSG00000214960 CRPPA CDP-L-ribitol pyrophosphorylase A -2.2194 0.0000
63171 ENSG00000196704 AMZ2 archaelysin family metallopeptidase 2 -2.2189 0.0000
63170 ENSG00000224281 SLC25A5-AS1 SLC25A5 antisense RNA 1 -2.2184 0.0000
63169 ENSG00000226479 TMEM185B transmembrane protein 185B -2.2184 0.0000
63168 ENSG00000249516 PRELID3BP6 PRELI domain containing 3B pseudogene 6 -2.2183 0.0000
63167 ENSG00000137727 ARHGAP20 Rho GTPase activating protein 20 -2.2179 0.0000
63166 ENSG00000189127 ANKRD34B ankyrin repeat domain 34B -2.2173 0.0000
63165 ENSG00000281383 novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 -2.2159 0.0000
63164 ENSG00000277422 REXO1L6P REXO1 like 6, pseudogene -2.2154 0.1058

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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