Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773775

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773775


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M402Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 10.0443 0.0000
2 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.5975 0.0000
3 ENSG00000244313 ribosomal protein S10 (RPS10) pseudogene 8.5693 0.0000
4 ENSG00000265401 novel transcript 8.3695 0.0000
5 ENSG00000284135 MIR3654 microRNA 3654 8.1990 0.0000
6 ENSG00000183389 OR56A4 olfactory receptor family 56 subfamily A member 4 8.0938 0.0000
7 ENSG00000254831 KRT18P58 keratin 18 pseudogene 58 8.0938 0.0000
8 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 8.0934 0.0000
9 ENSG00000204121 ECEL1P1 endothelin converting enzyme like 1 pseudogene 1 8.0839 0.0000
10 ENSG00000248527 MTATP6P1 MT-ATP6 pseudogene 1 8.0699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000256694 novel transcript -1.0000 0.0000
63172 ENSG00000256674 histone deacetylase 1 (HDAC1) pseudogene -1.0000 0.0279
63171 ENSG00000256650 RERG-IT1 RERG intronic transcript 1 -1.0000 0.0279
63170 ENSG00000256540 novel transcript -1.0000 0.0000
63169 ENSG00000256463 SALL3 spalt like transcription factor 3 -1.0000 0.0000
63168 ENSG00000256443 novel transcript -1.0000 0.0000
63167 ENSG00000256083 novel transcript, antisense to HMGA2 -1.0000 0.0000
63166 ENSG00000256028 novel transcript -1.0000 0.0000
63165 ENSG00000256008 novel transcript, antisense to CABP1 -1.0000 0.0000
63164 ENSG00000255931 novel transcript -1.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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