Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773776

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773776


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M403Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213269 RPS6P26 ribosomal protein S6 pseudogene 26 8.7914 0.0000
2 ENSG00000250405 splicing factor 4 (SF4) pseudogene 8.6707 0.0000
3 ENSG00000284135 MIR3654 microRNA 3654 8.5261 0.0000
4 ENSG00000244313 ribosomal protein S10 (RPS10) pseudogene 8.4716 0.0000
5 ENSG00000254831 KRT18P58 keratin 18 pseudogene 58 8.3941 0.0000
6 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 8.3804 0.0000
7 ENSG00000187475 H1-6 H1.6 linker histone, cluster member 8.3153 0.0000
8 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.3153 0.0000
9 ENSG00000251835 RNU6ATAC32P RNA, U6atac small nuclear 32, pseudogene 8.1999 0.0000
10 ENSG00000248223 novel transcript 8.1189 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000260710 novel transcript -1.0000 0.0000
63172 ENSG00000260677 novel transcript -1.0000 0.0000
63171 ENSG00000260672 novel transcript -1.0000 0.0008
63170 ENSG00000260650 novel transcript -1.0000 0.0008
63169 ENSG00000260628 Rho GTPase activating protein 23 (ARHGAP23) pseudogene -1.0000 0.0000
63168 ENSG00000260624 novel transcript, antisense to TBC1D21 -1.0000 0.0000
63167 ENSG00000260617 novel transcript, antisense to FAM38A -1.0000 0.0000
63166 ENSG00000260593 novel transcript, antisense to MARVELD3 -1.0000 0.0000
63165 ENSG00000260568 novel transcript -1.0000 0.0279
63164 ENSG00000260552 novel transcript, antisense to MOCOS -1.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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