Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773777

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773777


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M404Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 9.3758 0.0000
2 ENSG00000241217 RN7SL809P RNA, 7SL, cytoplasmic 809, pseudogene 9.0979 0.0000
3 ENSG00000231684 EIF1P3 eukaryotic translation initiation factor 1 pseudogene 3 8.8141 0.0000
4 ENSG00000284135 MIR3654 microRNA 3654 8.6835 0.0000
5 ENSG00000213269 RPS6P26 ribosomal protein S6 pseudogene 26 8.1929 0.0000
6 ENSG00000265401 novel transcript 8.1676 0.0000
7 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 8.1113 0.0000
8 ENSG00000275549 STPG3-AS1 STPG3 antisense RNA 1 8.0962 0.0000
9 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 8.0427 0.0000
10 ENSG00000166796 LDHC lactate dehydrogenase C 8.0409 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000263354 MIR5011 microRNA 5011 -1.0000 0.0282
63172 ENSG00000263342 novel transcript, antisense to SLC2A4 -1.0000 0.0000
63171 ENSG00000263171 novel transcript, antisense to KCTD11 -1.0000 0.0000
63170 ENSG00000263167 novel transcript, antisense to AATK -1.0000 0.0000
63169 ENSG00000263155 MYZAP myocardial zonula adherens protein -1.0000 0.0282
63168 ENSG00000263146 LINC01896 long intergenic non-protein coding RNA 1896 -1.0000 0.0000
63167 ENSG00000263098 novel transcript, antisense TBCD -1.0000 0.0000
63166 ENSG00000263006 ROCK1P1 Rho associated coiled-coil containing protein kinase 1 pseudogene 1 -1.0000 0.0282
63165 ENSG00000262966 novel transcript, antisense to NTN1 -1.0000 0.0000
63164 ENSG00000262903 novel transcript, antisense to CTNS -1.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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