Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773778

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773778


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M405Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 9.5124 0.0000
2 ENSG00000284135 MIR3654 microRNA 3654 8.9877 0.0000
3 ENSG00000213269 RPS6P26 ribosomal protein S6 pseudogene 26 8.7666 0.0000
4 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.3731 0.0000
5 ENSG00000244313 ribosomal protein S10 (RPS10) pseudogene 8.2857 0.0000
6 ENSG00000231684 EIF1P3 eukaryotic translation initiation factor 1 pseudogene 3 8.2747 0.0000
7 ENSG00000275549 STPG3-AS1 STPG3 antisense RNA 1 8.2159 0.0000
8 ENSG00000265401 novel transcript 8.0919 0.0000
9 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 8.0648 0.0008
10 ENSG00000248527 MTATP6P1 MT-ATP6 pseudogene 1 8.0376 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000259974 LINC00261 long intergenic non-protein coding RNA 261 -1.0000 0.0000
63172 ENSG00000259954 IL21R-AS1 IL21R antisense RNA 1 -1.0000 0.0000
63171 ENSG00000259934 kinase suppressor of ras 1 (KSR1) pseudogene -1.0000 0.0000
63170 ENSG00000259912 novel transcript -1.0000 0.0000
63169 ENSG00000259906 novel transcript -1.0000 0.0284
63168 ENSG00000259881 novel transcript, antisense to CBFA2T3 -1.0000 0.0008
63167 ENSG00000259843 novel transcript, antisense to HEATR3 -1.0000 0.0000
63166 ENSG00000259788 novel transcript, antisense to UAP1 -1.0000 0.0284
63164 ENSG00000259702 novel transcript -1.0000 0.0000
10 ENSG00000248527 MTATP6P1 MT-ATP6 pseudogene 1 8.0376 0.0008

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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