Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773779

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773779


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M406Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231684 EIF1P3 eukaryotic translation initiation factor 1 pseudogene 3 9.2226 0.0000
2 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 9.1355 0.0000
3 ENSG00000265095 FTLP12 ferritin light chain pseudogene 12 8.3054 0.0000
4 ENSG00000215030 RPL13P12 ribosomal protein L13 pseudogene 12 8.1446 0.0000
5 ENSG00000284135 MIR3654 microRNA 3654 8.0865 0.0000
6 ENSG00000198744 MTCO3P12 MT-CO3 pseudogene 12 7.7834 0.0000
7 ENSG00000163710 PCOLCE2 procollagen C-endopeptidase enhancer 2 7.7770 0.0000
8 ENSG00000240950 ribosomal protein L8 (RPL8) pseudogene 7.7770 0.0000
9 ENSG00000244313 ribosomal protein S10 (RPS10) pseudogene 7.7542 0.0000
10 ENSG00000240409 MTATP8P1 MT-ATP8 pseudogene 1 7.7527 0.1138

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000251866 SCARNA21B small Cajal body-specific RNA 21B -1.0000 0.0294
63172 ENSG00000251760 RNA5SP418 RNA, 5S ribosomal pseudogene 418 -1.0000 0.0000
63171 ENSG00000251717 RNA5SP419 RNA, 5S ribosomal pseudogene 419 -1.0000 0.0000
63170 ENSG00000251666 ZNF346-IT1 ZNF346 intronic transcript 1 -1.0000 0.0000
63169 ENSG00000251619 LINC02508 long intergenic non-protein coding RNA 2508 -1.0000 0.0294
63168 ENSG00000251525 TCP11X3P t-complex 11 family, X-linked 3, pseudogene -1.0000 0.0294
63167 ENSG00000251483 LYPLA1P2 LYPLA1 pseudogene 2 -1.0000 0.0009
63166 ENSG00000251478 t-complex 1 (TCP1) pseudogene -1.0000 0.0294
63165 ENSG00000251461 novel transcript, antisense to IGF2BP1 -1.0000 0.0009
63164 ENSG00000251442 LINC01094 long intergenic non-protein coding RNA 1094 -1.0000 0.0009

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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