Release notes

New SHOGoiN Release Notes

  • 2019/Jun/1 Data updated.

    • Human-mouse Cell Taxonomy now contains new information of 5 and 2 cell types in differentiated and stem stages, respectively.
    • Cell Marker now contains new 56 markers.

  • 2019/Mar/1 Data updated.

    • Transcriptome now contains new 1571 single-cell samples from HCA.
    • Cell Marker now contains new 56 markers.

  • 2019/01/1 Data updated.

    • Transcriptome mapping method was changed from bowtie2 to STAR.

  • 2018/Sep/1 Data updated.

    • Transcriptome now contains new 8 single-cell samples for early embryonic tissue.

  • 2018/Aug/1 Data updated.

    • Human-mouse Cell Taxonomy now contains new information of 1 cell type in differentiated stage.
    • Methylome now contains new 15 single-cell samples for spinal cord.

  • 2018/Mar/6 The 7 digit Anatomy ID system was upgraded to 22 digit version.

  • 2018/Mar/1 Data updated.

    • Cell Conversion now contains new 47 conversions.
    • Cell Lineage Map was updated (8 maps).
    • Cell Marker now contains new 49 markers.

  • 2018/Feb/1 Data updated.

    • Cell Conversion now contains new 429 conversions.
    • Cell Lineage Map was updated (17 maps).

  • 2018/Jan/1 Data updated.

    • Human-mouse Cell Taxonomy was cleaned-up (from 3,645 classifications to 3,612 classifications).
    • Cell Conversion now contains new 77 conversions.
    • Cell Lineage Map was updated (3 map).

  • 2017/Nov/1 Data updated.

    • Human-mouse Cell Taxonomy now contains new information of 21 cell types in developmental and differentiated stage.
    • Methylome now contains new 46 single-cell samples.
    • Cell Marker now contains new 85 markers.

  • 2017/Aug/1 Data updated.

    • Cell Lineage Map of Strongylocentrotus purpuratus is newly opened.
    • Cell Taxonomy, Transcriptome, Methylome, Cell Conversion, Cell Marker, Image were cleaned-up.

  • 2017/Jul/1 New SHOGoiN web page opened to public.

  • 2017/Jul/1 Data updated.

    • Transcriptome now contains new 15 single-cell samples.

  • 2017/Jun/1 Data updated.

    • Human-mouse Cell Taxonomy now contains new information of 32 cell types in developmental and differentiated stage.
    • Cell Lineage Map now contains new 2 maps.

  • 2017/May/1 Data updated.

    • Human-mouse Cell Taxonomy now contains new information of 169 cell types in developmental and differentiated stage.
    • Cell Marker now contains new 183 markers for stem cell types in the developmental stages of skin, tooth, neuron, and so on.
    • Transcriptome now contains new 279 single-cell samples.
    • Methylome now contains new 70 single-cell samples.
    • Image now contains new 617 cell and tissue images.

  • 2017/Feb/1 Data updated.

    • Cell Marker now contains new 79 markers for stem cell types in the early developmental stages (zygotes and 2-cell stage cells, and so on) stomach cells, and lung cells.

  • 2016/Dec/1 Data updated.

    • Human-mouse Cell Taxonomy now contains new information of 16 neuronal cell types in developmental and differentiated stage.
    • Cell Marker now contains new 141 markers for immune cell types (red blood cells and thrombocytes) and pancreatic cell types.
    • Cell Transcriptome now contains new 1,114 single-cell samples.

  • 2016/Nov/1 Data updated.

    • Human Cell Taxonomy now contains new information of 16 CNS cell types in developmental and differentiated stage.
    • Cell Marker now contains new 90 markers for CNS cell types (neurons, astrocytes, oligodendrocytes).
    • Cell Methylome now contains new 36 bulk-cell samples.

  • 2016/Sep/1 Data updated.

    • Mouse Cell Taxonomy now contains new information of 6 immune cell types in developmental stage.

  • 2016/Aug/1 Data updated.

    • Cell Lineage Map section is now open.
    • Human Cell Taxonomy now contains new information of 1,064 various cell types in the differentiated stage and stem cells in the early developmental stage.
    • Cell Marker now contains new 414 markers for chondrocytes, retinal cells, kidney cells, and lung cells.
    • Cell Transcriptome now contains new 2,530 single-cell samples.
    • Cell Conversion now contains new 313 cell-to-cell conversions.

  • 2016/Jul/1 New SHOGoiN web page opened to public.

  • 2016/Mar/1 Data updated.

    • Human Anatomy IDs were re-assigned to 1,737 physical positions.
    • Human Cell Taxonomy now contains new information of 73 neural cells in the differentiated stage and stem cells in the early developmental stage.
    • Cell Marker now contains new 107 markers for immune cells, adipocytes, and chondrocytes.
    • Cell Transcriptome now contains new 145 single-cell samples.
    • Cell Image now contains new 65 images.

  • 2016/Feb/1 Data updated.

    • Human Cell Taxonomy now contains new information of 36 immune cells in the differentiated stage.
    • Cell Marker now contains new 134 markers for immune cells.
    • Cell Transcriptome now contains new 145 single-cell samples.
    • Cell Conversion now contains new 52 cell-to-cell conversions.

  • 2015/Dec/1 Data updated.

    • Human Cell Taxonomy now contains new information of 21 intestinal cells in the differentiated and developmental stages.
    • Cell Marker now contains new 115 markers for immune and neural crest cells.

  • 2015/Nov/1 Data updated.

    • Human Cell Taxonomy now contains new information of 20 thymic, dermal, and orbital cells in the differentiated stage.
    • Cell Conversion now contains new 45 cell-to-cell conversions.

  • 2015/Oct/1 Data updated.

    • Human Cell Taxonomy now contains new information of 20 immune and peripheral nervous system cells in the developmental stage.
    • Cell Marker now contains new 211 markers for immune, neuronal and endothelial cells.

  • 2015/Sep/1 Data updated.

    • Cell Marker now contains new 140 markers for neuronal, endothelial, smooth muscle, immune cells, and various stem cells.

  • 2015/Aug/1 Data updated.

    • Human Cell Taxonomy now contains the information of 36 cells from the stages between zygotes and gastrulas.
    • Cell Marker now contains new 275 markers for cardiac, immune, and various stem cells.

  • 2015/Jul/1 SHOGoiN renewed version opened.

Old SHOGoiN Release Notes

  • 2014/Feb/1 Data updated.

    • Differentiated cell: 2722 cell taxonomy key, 638 images, 229 OBO terms are linked.
    • Stem cell: 66 cell taxonomy key, 37 images, 48 OBO terms are linked.

  • 2013/Dec/11 SHOGoiN (former CELLPEDIA) opened to public.

    • Differentiated cell: 2718 cell taxonomy key, 481 images, 229 OBO terms are linked.
    • Stem cell: 37 images, 48 OBO terms are linked.