Release notes

New SHOGoiN Release Notes

2020/Sep/1 Data Updated.
- Cell Methylome now contains new 191 single-cell samples for bone marrow.
2020/Jul/1 Data updated.
- Human-mouse Cell Taxonomy now contains new information of 2 cell types in differentiated stage.
- Transcriptome now contains new 547 single-cell samples for Liver.
2019/Sep/1 Data updated.
- Human-mouse Cell Taxonomy now contains new information of 2 and 1 cell types in stem and embryo stages, respectively. 1 cell type in differentiated changed to embryo stages.
- Cell Methylome now contains new 661 samples.
- MIACARM now contains new 1 item.
2019/Jun/1 Data updated.
- Human-mouse Cell Taxonomy now contains new information of 5 and 2 cell types in differentiated and stem stages, respectively.
- Cell Marker now contains new 56 markers.
2019/Mar/1 Data updated.
- Transcriptome now contains new 1571 single-cell samples from HCA.
- Cell Marker now contains new 56 markers.
2019/01/1 Data updated.
- Transcriptome mapping method was changed from bowtie2 to STAR.
2018/Sep/1 Data updated.
- Transcriptome now contains new 8 single-cell samples for early embryonic tissue.
2018/Aug/1 Data updated.
- Human-mouse Cell Taxonomy now contains new information of 1 cell type in differentiated stage.
- Methylome now contains new 15 single-cell samples for spinal cord.
2018/Mar/6 The 7 digit Anatomy ID system was upgraded to 22 digit version.
2018/Mar/1 Data updated.
- Cell Conversion now contains new 47 conversions.
- Cell Lineage Map was updated (8 maps).
- Cell Marker now contains new 49 markers.
2018/Feb/1 Data updated.
- Cell Conversion now contains new 429 conversions.
- Cell Lineage Map was updated (17 maps).
2018/Jan/1 Data updated.
- Human-mouse Cell Taxonomy was cleaned-up (from 3,645 classifications to 3,612 classifications).
- Cell Conversion now contains new 77 conversions.
- Cell Lineage Map was updated (3 map).
2017/Nov/1 Data updated.
- Human-mouse Cell Taxonomy now contains new information of 21 cell types in developmental and differentiated stage.
- Methylome now contains new 46 single-cell samples.
- Cell Marker now contains new 85 markers.
2017/Aug/1 Data updated.
- Cell Lineage Map of Strongylocentrotus purpuratus is newly opened.
- Cell Taxonomy, Transcriptome, Methylome, Cell Conversion, Cell Marker, Image were cleaned-up.
2017/Jul/1 New SHOGoiN web page opened to public.
2017/Jul/1 Data updated.
- Transcriptome now contains new 15 single-cell samples.
2017/Jun/1 Data updated.
- Human-mouse Cell Taxonomy now contains new information of 32 cell types in developmental and differentiated stage.
- Cell Lineage Map now contains new 2 maps.
2017/May/1 Data updated.
- Human-mouse Cell Taxonomy now contains new information of 169 cell types in developmental and differentiated stage.
- Cell Marker now contains new 183 markers for stem cell types in the developmental stages of skin, tooth, neuron, and so on.
- Transcriptome now contains new 279 single-cell samples.
- Methylome now contains new 70 single-cell samples.
- Image now contains new 617 cell and tissue images.
2017/Feb/1 Data updated.
- Cell Marker now contains new 79 markers for stem cell types in the early developmental stages (zygotes and 2-cell stage cells, and so on) stomach cells, and lung cells.
2016/Dec/1 Data updated.
- Human-mouse Cell Taxonomy now contains new information of 16 neuronal cell types in developmental and differentiated stage.
- Cell Marker now contains new 141 markers for immune cell types (red blood cells and thrombocytes) and pancreatic cell types.
- Cell Transcriptome now contains new 1,114 single-cell samples.
2016/Nov/1 Data updated.
- Human Cell Taxonomy now contains new information of 16 CNS cell types in developmental and differentiated stage.
- Cell Marker now contains new 90 markers for CNS cell types (neurons, astrocytes, oligodendrocytes).
- Cell Methylome now contains new 36 bulk-cell samples.
2016/Sep/1 Data updated.
- Mouse Cell Taxonomy now contains new information of 6 immune cell types in developmental stage.
2016/Aug/1 Data updated.
- Cell Lineage Map section is now open.
- Human Cell Taxonomy now contains new information of 1,064 various cell types in the differentiated stage and stem cells in the early developmental stage.
- Cell Marker now contains new 414 markers for chondrocytes, retinal cells, kidney cells, and lung cells.
- Cell Transcriptome now contains new 2,530 single-cell samples.
- Cell Conversion now contains new 313 cell-to-cell conversions.
2016/Jul/1 New SHOGoiN web page opened to public.
2016/Mar/1 Data updated.
- Human Anatomy IDs were re-assigned to 1,737 physical positions.
- Human Cell Taxonomy now contains new information of 73 neural cells in the differentiated stage and stem cells in the early developmental stage.
- Cell Marker now contains new 107 markers for immune cells, adipocytes, and chondrocytes.
- Cell Transcriptome now contains new 145 single-cell samples.
- Cell Image now contains new 65 images.
2016/Feb/1 Data updated.
- Human Cell Taxonomy now contains new information of 36 immune cells in the differentiated stage.
- Cell Marker now contains new 134 markers for immune cells.
- Cell Transcriptome now contains new 145 single-cell samples.
- Cell Conversion now contains new 52 cell-to-cell conversions.
2015/Dec/1 Data updated.
- Human Cell Taxonomy now contains new information of 21 intestinal cells in the differentiated and developmental stages.
- Cell Marker now contains new 115 markers for immune and neural crest cells.
2015/Nov/1 Data updated.
- Human Cell Taxonomy now contains new information of 20 thymic, dermal, and orbital cells in the differentiated stage.
- Cell Conversion now contains new 45 cell-to-cell conversions.
2015/Oct/1 Data updated.
- Human Cell Taxonomy now contains new information of 20 immune and peripheral nervous system cells in the developmental stage.
- Cell Marker now contains new 211 markers for immune, neuronal and endothelial cells.
2015/Sep/1 Data updated.
- Cell Marker now contains new 140 markers for neuronal, endothelial, smooth muscle, immune cells, and various stem cells.
2015/Aug/1 Data updated.
- Human Cell Taxonomy now contains the information of 36 cells from the stages between zygotes and gastrulas.
- Cell Marker now contains new 275 markers for cardiac, immune, and various stem cells.
2015/Jul/1 SHOGoiN renewed version opened.

Old SHOGoiN Release Notes

2014/Feb/1 Data updated.
- Differentiated cell: 2722 cell taxonomy key, 638 images, 229 OBO terms are linked.
- Stem cell: 66 cell taxonomy key, 37 images, 48 OBO terms are linked.
2013/Dec/11 SHOGoiN (former CELLPEDIA) opened to public.
- Differentiated cell: 2718 cell taxonomy key, 481 images, 229 OBO terms are linked.
- Stem cell: 37 images, 48 OBO terms are linked.