Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1269179

Expression Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Expression Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM1269179 Profile download	6000003010000000000000-738	Sequence Read Archive	SRP033135	SRP033135_T185	Pseudo-temporal ordering of individual cells reveals regulators of differentiation	Transcriptome	Myoblast_T48 (Skeletal muscle)	Human	Muscle	RNA-seq	HiSeq 2500	Sequence

Histogram (Expression count)

Top 10 up-regulated genes

Rank	ENSG	Gene symbol	Description	Z-score
1	ENSG00000159251	ACTC1	actin alpha cardiac muscle 1	188.9275
2	ENSG00000167552	TUBA1A	tubulin alpha 1a	72.1304
3	ENSG00000155657	TTN	titin	47.3672
4	ENSG00000159173	TNNI1	troponin I1, slow skeletal type	29.6993
5	ENSG00000143632	ACTA1	actin alpha 1, skeletal muscle	28.2576
6	ENSG00000075624	ACTB	actin beta	24.7222
7	ENSG00000210082	MT-RNR2	mitochondrially encoded 16S rRNA	22.2428
8	ENSG00000133055	MYBPH	myosin binding protein H	19.5737
9	ENSG00000103994	ZNF106	zinc finger protein 106	18.9554
10	ENSG00000156508	EEF1A1	eukaryotic translation elongation factor 1 alpha 1	18.6799

Bottom 10 down-regulated genes

Rank	ENSG	Gene symbol	Description	Z-score
58503	ENSG00000285738		Novel transcript	-0.0685
58502	ENSG00000285737	LINC02680	long intergenic non-protein coding RNA 2680	-0.0685
58501	ENSG00000285736		Novel transcript	-0.0685
58500	ENSG00000285735	LINC02717	long intergenic non-protein coding RNA 2717	-0.0685
58499	ENSG00000285734		novel transcript, antisense to CACNA1C	-0.0685
58498	ENSG00000285733		novel protein	-0.0685
58497	ENSG00000285732		novel transcript, antisense to ABCD2	-0.0685
58496	ENSG00000285731		Novel transcript, antisense to TBC1D5	-0.0685
58495	ENSG00000285729		novel transcript	-0.0685
58494	ENSG00000285728		novel transcript, antisense to PPIH	-0.0685

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	Z-score

Now loading...