Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1269189
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1269189
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T194
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T48 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000251562
MALAT1
metastasis associated lung adenocarcinoma transcript 1
96.0223
2
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
75.3745
3
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
66.7543
4
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
54.4176
5
ENSG00000108821
COL1A1
collagen type I alpha 1 chain
50.3147
6
ENSG00000088448
ANKRD10
ankyrin repeat domain 10
36.0180
7
ENSG00000115414
FN1
fibronectin 1
33.5239
8
ENSG00000245532
NEAT1
nuclear paraspeckle assembly transcript 1
31.5779
9
ENSG00000184009
ACTG1
actin gamma 1
29.3298
10
ENSG00000091986
CCDC80
coiled-coil domain containing 80
28.5640
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285741
novel transcript
-0.1068
58502
ENSG00000285740
novel transcript
-0.1068
58501
ENSG00000285739
novel transcript, antisense to NRG3
-0.1068
58500
ENSG00000285738
Novel transcript
-0.1068
58499
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.1068
58498
ENSG00000285736
Novel transcript
-0.1068
58497
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.1068
58496
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.1068
58495
ENSG00000285733
novel protein
-0.1068
58494
ENSG00000285732
novel transcript, antisense to ABCD2
-0.1068
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
Now loading...
