Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1269210
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1269210
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T215
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T48 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2500
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000251562
MALAT1
metastasis associated lung adenocarcinoma transcript 1
100.3941
2
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
84.3078
3
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
70.8936
4
ENSG00000156508
EEF1A1
eukaryotic translation elongation factor 1 alpha 1
56.0548
5
ENSG00000159251
ACTC1
actin alpha cardiac muscle 1
50.8878
6
ENSG00000075624
ACTB
actin beta
43.4029
7
ENSG00000137801
THBS1
thrombospondin 1
41.4162
8
ENSG00000113140
SPARC
secreted protein acidic and cysteine rich
39.6297
9
ENSG00000166710
B2M
beta-2-microglobulin
33.6002
10
ENSG00000184009
ACTG1
actin gamma 1
28.9722
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.1048
58502
ENSG00000285736
Novel transcript
-0.1048
58501
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.1048
58500
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.1048
58499
ENSG00000285733
novel protein
-0.1048
58498
ENSG00000285732
novel transcript, antisense to ABCD2
-0.1048
58497
ENSG00000285731
Novel transcript, antisense to TBC1D5
-0.1048
58496
ENSG00000285730
novel transcript
-0.1048
58495
ENSG00000285729
novel transcript
-0.1048
58494
ENSG00000285727
novel transcript
-0.1048
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
download
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