Human Omics database for
the Generation of iPS and Normal Cells
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All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Transcriptome: GSM1269275
Expression Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM1269275
Profile download
6000003010000000000000-738
Sequence Read Archive
SRP033135
SRP033135_T271
Pseudo-temporal ordering of individual cells reveals regulators of differentiation
Transcriptome
Myoblast_T72 (Skeletal muscle)
Human
Muscle
RNA-seq
HiSeq 2000
Sequence
Histogram (Expression count)
Top 10 up-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
1
ENSG00000210082
MT-RNR2
mitochondrially encoded 16S rRNA
153.9178
2
ENSG00000198712
MT-CO2
mitochondrially encoded cytochrome c oxidase II
91.2634
3
ENSG00000198727
MT-CYB
mitochondrially encoded cytochrome b
78.9754
4
ENSG00000198886
MT-ND4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
68.4889
5
ENSG00000198938
MT-CO3
mitochondrially encoded cytochrome c oxidase III
63.8262
6
ENSG00000198804
MT-CO1
mitochondrially encoded cytochrome c oxidase I
60.2502
7
ENSG00000155657
TTN
titin
45.0968
8
ENSG00000198763
MT-ND2
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2
33.9327
9
ENSG00000198899
MT-ATP6
mitochondrially encoded ATP synthase membrane subunit 6
32.7552
10
ENSG00000251562
MALAT1
metastasis associated lung adenocarcinoma transcript 1
26.9996
Bottom 10 down-regulated genes
Rank
ENSG
Gene symbol
Description
Z-score
58503
ENSG00000285742
novel transcript
-0.0305
58502
ENSG00000285741
novel transcript
-0.0305
58501
ENSG00000285740
novel transcript
-0.0305
58500
ENSG00000285739
novel transcript, antisense to NRG3
-0.0305
58499
ENSG00000285738
Novel transcript
-0.0305
58498
ENSG00000285737
LINC02680
long intergenic non-protein coding RNA 2680
-0.0305
58497
ENSG00000285736
Novel transcript
-0.0305
58496
ENSG00000285735
LINC02717
long intergenic non-protein coding RNA 2717
-0.0305
58495
ENSG00000285734
novel transcript, antisense to CACNA1C
-0.0305
58494
ENSG00000285733
novel protein
-0.0305
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
Z-score
full
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