Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1657878

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type


Profile download
1010201030000000000000Sequence Read ArchiveSRP057196SRP057196_T8A survey of human brain transcriptome diversity at the single cell levelTranscriptomeCerebral cortex cell (Cerebral cortex (temporal lobe))HumanBrainRNA-seqNextSeq 500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 162.5357
2 ENSG00000229807 XIST X inactive specific transcript 92.1907
3 ENSG00000270641 TSIX TSIX transcript, XIST antisense RNA 87.0612
4 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 48.9171
5 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 47.1298
6 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 40.1549
7 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 23.7057
8 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 23.4586
9 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 22.0927
10 ENSG00000112531 QKI QKI, KH domain containing RNA binding 19.3754

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285742 novel transcript -0.0527
58502 ENSG00000285741 novel transcript -0.0527
58501 ENSG00000285740 novel transcript -0.0527
58500 ENSG00000285739 novel transcript, antisense to NRG3 -0.0527
58499 ENSG00000285738 Novel transcript -0.0527
58498 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0527
58497 ENSG00000285736 Novel transcript -0.0527
58496 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.0527
58495 ENSG00000285734 novel transcript, antisense to CACNA1C -0.0527
58494 ENSG00000285733 novel protein -0.0527

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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