Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1657980

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type


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1010201030000000000000Sequence Read ArchiveSRP057196SRP057196_T110A survey of human brain transcriptome diversity at the single cell levelTranscriptomeCerebral cortex cell (Cerebral cortex (temporal lobe))HumanBrainRNA-seqNextSeq 500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 125.5124
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 78.0416
3 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 66.9677
4 ENSG00000146469 VIP vasoactive intestinal peptide 56.1423
5 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 49.4960
6 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 30.0257
7 ENSG00000131711 MAP1B microtubule associated protein 1B 27.4533
8 ENSG00000270641 TSIX TSIX transcript, XIST antisense RNA 25.7511
9 ENSG00000229807 XIST X inactive specific transcript 25.6172
10 ENSG00000177479 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 25.2060

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285743 novel transcript, LINP1-LINC00707 readthrough -0.0882
58502 ENSG00000285742 novel transcript -0.0882
58501 ENSG00000285741 novel transcript -0.0882
58500 ENSG00000285740 novel transcript -0.0882
58499 ENSG00000285739 novel transcript, antisense to NRG3 -0.0882
58498 ENSG00000285738 Novel transcript -0.0882
58497 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0882
58496 ENSG00000285736 Novel transcript -0.0882
58495 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.0882
58494 ENSG00000285734 novel transcript, antisense to CACNA1C -0.0882

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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