Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1658000

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1658000


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1010201030000000000000Sequence Read ArchiveSRP057196SRP057196_T130A survey of human brain transcriptome diversity at the single cell levelTranscriptomeCerebral cortex cell (Cerebral cortex (temporal lobe))HumanBrainRNA-seqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 210.6826
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 54.1377
3 ENSG00000110436 SLC1A2 solute carrier family 1 member 2 45.4688
4 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 29.8516
5 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 29.2817
6 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 29.1064
7 ENSG00000245532 NEAT1 nuclear paraspeckle assembly transcript 1 20.1196
8 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 16.7441
9 ENSG00000018625 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 15.1769
10 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 15.1659

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285746 putative UPF0607 protein ENSP00000383144 -0.0348
58502 ENSG00000285745 general transcription factor IIH subunit 5 (GTF2H5) pseudogene -0.0348
58501 ENSG00000285744 novel transcript -0.0348
58500 ENSG00000285743 novel transcript, LINP1-LINC00707 readthrough -0.0348
58499 ENSG00000285742 novel transcript -0.0348
58498 ENSG00000285741 novel transcript -0.0348
58497 ENSG00000285740 novel transcript -0.0348
58496 ENSG00000285739 novel transcript, antisense to NRG3 -0.0348
58495 ENSG00000285738 Novel transcript -0.0348
58494 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0348

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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