Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1658003

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1658003


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1010201030000000000000Sequence Read ArchiveSRP057196SRP057196_T133A survey of human brain transcriptome diversity at the single cell levelTranscriptomeCerebral cortex cell (Cerebral cortex (temporal lobe))HumanBrainRNA-seqMiSeqSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000251562 MALAT1 metastasis associated lung adenocarcinoma transcript 1 86.1426
2 ENSG00000120251 GRIA2 glutamate ionotropic receptor AMPA type subunit 2 44.6956
3 ENSG00000177565 TBL1XR1 transducin beta like 1 X-linked receptor 1 44.2869
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 38.0362
5 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 37.6996
6 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 37.2909
7 ENSG00000078018 MAP2 microtubule associated protein 2 35.6561
8 ENSG00000176887 SOX11 SRY-box transcription factor 11 33.2520
9 ENSG00000213639 PPP1CB protein phosphatase 1 catalytic subunit beta 32.2663
10 ENSG00000255248 MIR100HG mir-100-let-7a-2-mir-125b-1 cluster host gene 29.5497

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285745 general transcription factor IIH subunit 5 (GTF2H5) pseudogene -0.0931
58502 ENSG00000285744 novel transcript -0.0931
58501 ENSG00000285743 novel transcript, LINP1-LINC00707 readthrough -0.0931
58500 ENSG00000285742 novel transcript -0.0931
58499 ENSG00000285741 novel transcript -0.0931
58498 ENSG00000285740 novel transcript -0.0931
58497 ENSG00000285739 novel transcript, antisense to NRG3 -0.0931
58496 ENSG00000285738 Novel transcript -0.0931
58495 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0931
58494 ENSG00000285736 Novel transcript -0.0931

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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