Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677474

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T2The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 117.5890
2 ENSG00000133112 TPT1 tumor protein, translationally-controlled 1 68.0797
3 ENSG00000196230 TUBB tubulin beta class I 52.5465
4 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 48.8924
5 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 44.2539
6 ENSG00000089157 RPLP0 ribosomal protein lateral stalk subunit P0 42.4146
7 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 41.3441
8 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 39.2156
9 ENSG00000273149 novel transcript, antisense to TPT1 37.2040
10 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 33.6114

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285741 novel transcript -0.1064
58502 ENSG00000285740 novel transcript -0.1064
58501 ENSG00000285739 novel transcript, antisense to NRG3 -0.1064
58500 ENSG00000285738 Novel transcript -0.1064
58499 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.1064
58498 ENSG00000285736 Novel transcript -0.1064
58497 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.1064
58496 ENSG00000285734 novel transcript, antisense to CACNA1C -0.1064
58495 ENSG00000285733 novel protein -0.1064
58494 ENSG00000285731 Novel transcript, antisense to TBC1D5 -0.1064

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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