Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677519

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T47The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 113.3449
2 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 110.7832
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 68.0112
4 ENSG00000174444 RPL4 ribosomal protein L4 50.1135
5 ENSG00000089157 RPLP0 ribosomal protein lateral stalk subunit P0 35.4020
6 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 33.5587
7 ENSG00000196230 TUBB tubulin beta class I 32.8997
8 ENSG00000168028 RPSA ribosomal protein SA 31.5470
9 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 28.8762
10 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 25.7049

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285741 novel transcript -0.1059
58502 ENSG00000285740 novel transcript -0.1059
58501 ENSG00000285739 novel transcript, antisense to NRG3 -0.1059
58500 ENSG00000285738 Novel transcript -0.1059
58499 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.1059
58498 ENSG00000285736 Novel transcript -0.1059
58497 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.1059
58496 ENSG00000285734 novel transcript, antisense to CACNA1C -0.1059
58495 ENSG00000285733 novel protein -0.1059
58494 ENSG00000285732 novel transcript, antisense to ABCD2 -0.1059

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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