Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677601

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type


Profile download
7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T129The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 86.7470
2 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 85.0307
3 ENSG00000133112 TPT1 tumor protein, translationally-controlled 1 79.1919
4 ENSG00000089157 RPLP0 ribosomal protein lateral stalk subunit P0 55.2588
5 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 55.1725
6 ENSG00000137154 RPS6 ribosomal protein S6 39.0877
7 ENSG00000174444 RPL4 ribosomal protein L4 38.2684
8 ENSG00000273149 novel transcript, antisense to TPT1 37.2076
9 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 34.4736
10 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 34.4219

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285743 novel transcript, LINP1-LINC00707 readthrough -0.1108
58502 ENSG00000285742 novel transcript -0.1108
58501 ENSG00000285741 novel transcript -0.1108
58500 ENSG00000285740 novel transcript -0.1108
58499 ENSG00000285739 novel transcript, antisense to NRG3 -0.1108
58498 ENSG00000285738 Novel transcript -0.1108
58497 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.1108
58496 ENSG00000285736 Novel transcript -0.1108
58495 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.1108
58494 ENSG00000285734 novel transcript, antisense to CACNA1C -0.1108

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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