Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677657

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677657


Profile download
7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T185The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 165.9877
2 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 96.0184
3 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 82.8030
4 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 52.6308
5 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 35.1611
6 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 24.4399
7 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 23.6353
8 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 23.2833
9 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 22.5491
10 ENSG00000184009 ACTG1 actin gamma 1 21.6339

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285744 novel transcript -0.0700
58502 ENSG00000285743 novel transcript, LINP1-LINC00707 readthrough -0.0700
58501 ENSG00000285742 novel transcript -0.0700
58500 ENSG00000285741 novel transcript -0.0700
58499 ENSG00000285740 novel transcript -0.0700
58498 ENSG00000285739 novel transcript, antisense to NRG3 -0.0700
58497 ENSG00000285738 Novel transcript -0.0700
58496 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0700
58495 ENSG00000285736 Novel transcript -0.0700
58494 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.0700

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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