Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677684

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677684


Profile download
7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T212The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 168.4396
2 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 84.1011
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 61.6653
4 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 55.8613
5 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 40.7252
6 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 29.2595
7 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 29.0438
8 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 21.8818
9 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 20.2943
10 ENSG00000108055 SMC3 structural maintenance of chromosomes 3 18.9454

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285729 novel transcript -0.0998
58502 ENSG00000285728 novel transcript, antisense to PPIH -0.0998
58501 ENSG00000285727 novel transcript -0.0998
58500 ENSG00000285726 novel transcript -0.0998
58499 ENSG00000285725 novel transcript -0.0998
58498 ENSG00000285724 novel transcript -0.0998
58497 ENSG00000285723 novel protein -0.0998
58496 ENSG00000285722 novel transcript -0.0998
58494 ENSG00000285720 Putative protein FAM90A16P/FAM90A17P -0.0998
10 ENSG00000108055 SMC3 structural maintenance of chromosomes 3 18.9454

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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