Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677694

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677694


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T222The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 83.0549
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 54.3547
3 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 42.4672
4 ENSG00000089157 RPLP0 ribosomal protein lateral stalk subunit P0 40.5809
5 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 37.2472
6 ENSG00000156976 EIF4A2 eukaryotic translation initiation factor 4A2 34.9549
7 ENSG00000070756 PABPC1 poly(A) binding protein cytoplasmic 1 28.4053
8 ENSG00000170315 UBB ubiquitin B 28.1761
9 ENSG00000139351 SYCP3 synaptonemal complex protein 3 25.7003
10 ENSG00000128645 HOXD1 homeobox D1 25.4515

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285714 novel transcript -0.1966
58502 ENSG00000285713 novel transcript -0.1966
58501 ENSG00000285712 novel transcript -0.1966
58500 ENSG00000285711 LINC02835 long intergenic non-protein coding RNA 2835 -0.1966
58499 ENSG00000285710 novel transcript, antisense to DDX19A -0.1966
58498 ENSG00000285709 Novel transcript -0.1966
58497 ENSG00000285708 novel protein -0.1966
58496 ENSG00000285707 novel transcript -0.1966
58495 ENSG00000285706 Novel transcript -0.1966
58494 ENSG00000285705 novel transcript -0.1966

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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