Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677706

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677706


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7100400010000000000000-875Sequence Read ArchiveSRP050499SRP050499_T234The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomeGonadal somatic cellHumanGenitaliaRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 131.2573
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 130.9507
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 58.2861
4 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 52.6362
5 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 48.1272
6 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 46.6099
7 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 34.6428
8 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 32.6366
9 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 29.6797
10 ENSG00000133112 TPT1 tumor protein, translationally-controlled 1 25.0659

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285745 general transcription factor IIH subunit 5 (GTF2H5) pseudogene -0.0637
58502 ENSG00000285744 novel transcript -0.0637
58501 ENSG00000285743 novel transcript, LINP1-LINC00707 readthrough -0.0637
58500 ENSG00000285742 novel transcript -0.0637
58499 ENSG00000285741 novel transcript -0.0637
58498 ENSG00000285740 novel transcript -0.0637
58497 ENSG00000285739 novel transcript, antisense to NRG3 -0.0637
58496 ENSG00000285738 Novel transcript -0.0637
58495 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0637
58494 ENSG00000285736 Novel transcript -0.0637

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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