Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677770

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677770


Profile download
7100400010000000000000-875Sequence Read ArchiveSRP050499SRP050499_T298The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomeGonadal somatic cellHumanGenitaliaRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 111.8783
2 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 75.7858
3 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 45.5767
4 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 37.9480
5 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 37.5882
6 ENSG00000133112 TPT1 tumor protein, translationally-controlled 1 37.0124
7 ENSG00000049130 KITLG KIT ligand 31.7227
8 ENSG00000184009 ACTG1 actin gamma 1 26.7029
9 ENSG00000124098 FAM210B family with sequence similarity 210 member B 26.4150
10 ENSG00000184937 WT1 WT1 transcription factor 23.4283

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285746 putative UPF0607 protein ENSP00000383144 -0.0876
58502 ENSG00000285745 general transcription factor IIH subunit 5 (GTF2H5) pseudogene -0.0876
58501 ENSG00000285744 novel transcript -0.0876
58500 ENSG00000285743 novel transcript, LINP1-LINC00707 readthrough -0.0876
58499 ENSG00000285742 novel transcript -0.0876
58498 ENSG00000285741 novel transcript -0.0876
58497 ENSG00000285740 novel transcript -0.0876
58496 ENSG00000285739 novel transcript, antisense to NRG3 -0.0876
58495 ENSG00000285738 Novel transcript -0.0876
58494 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0876

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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