Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677774

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677774


Profile download
7100400010000000000000-875Sequence Read ArchiveSRP050499SRP050499_T302The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomeGonadal somatic cellHumanGenitaliaRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 161.1008
2 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 67.9980
3 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 66.2478
4 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 64.7876
5 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 59.3137
6 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 56.7404
7 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 48.3288
8 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 40.0288
9 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 25.7094
10 ENSG00000132002 DNAJB1 DnaJ heat shock protein family (Hsp40) member B1 19.8711

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285746 putative UPF0607 protein ENSP00000383144 -0.0534
58502 ENSG00000285745 general transcription factor IIH subunit 5 (GTF2H5) pseudogene -0.0534
58501 ENSG00000285744 novel transcript -0.0534
58500 ENSG00000285743 novel transcript, LINP1-LINC00707 readthrough -0.0534
58499 ENSG00000285742 novel transcript -0.0534
58498 ENSG00000285741 novel transcript -0.0534
58497 ENSG00000285740 novel transcript -0.0534
58496 ENSG00000285739 novel transcript, antisense to NRG3 -0.0534
58495 ENSG00000285738 Novel transcript -0.0534
58494 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0534

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

full download

Now loading...