Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677776

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type


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7100400010000000000000-875Sequence Read ArchiveSRP050499SRP050499_T304The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomeGonadal somatic cellHumanGenitaliaRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 135.2972
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 91.5499
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 88.2000
4 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 71.0403
5 ENSG00000132002 DNAJB1 DnaJ heat shock protein family (Hsp40) member B1 44.2251
6 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 43.6754
7 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 39.0301
8 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 35.6644
9 ENSG00000211459 MT-RNR1 mitochondrially encoded 12S rRNA 32.8169
10 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 28.0251

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285742 novel transcript -0.0607
58502 ENSG00000285741 novel transcript -0.0607
58501 ENSG00000285740 novel transcript -0.0607
58500 ENSG00000285739 novel transcript, antisense to NRG3 -0.0607
58499 ENSG00000285738 Novel transcript -0.0607
58498 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0607
58497 ENSG00000285736 Novel transcript -0.0607
58496 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.0607
58495 ENSG00000285734 novel transcript, antisense to CACNA1C -0.0607
58494 ENSG00000285733 novel protein -0.0607

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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