Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677782

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type


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7100400010000000000000-875Sequence Read ArchiveSRP050499SRP050499_T310The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomeGonadal somatic cellHumanGenitaliaRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 133.9183
2 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 113.9417
3 ENSG00000080824 HSP90AA1 heat shock protein 90 alpha family class A member 1 74.3173
4 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 61.3387
5 ENSG00000198899 MT-ATP6 mitochondrially encoded ATP synthase membrane subunit 6 51.4936
6 ENSG00000198763 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 44.4434
7 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 41.0142
8 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 32.9014
9 ENSG00000132002 DNAJB1 DnaJ heat shock protein family (Hsp40) member B1 30.9655
10 ENSG00000211459 MT-RNR1 mitochondrially encoded 12S rRNA 29.5242

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285743 novel transcript, LINP1-LINC00707 readthrough -0.0562
58502 ENSG00000285742 novel transcript -0.0562
58501 ENSG00000285741 novel transcript -0.0562
58500 ENSG00000285740 novel transcript -0.0562
58499 ENSG00000285739 novel transcript, antisense to NRG3 -0.0562
58498 ENSG00000285738 Novel transcript -0.0562
58497 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0562
58496 ENSG00000285736 Novel transcript -0.0562
58495 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.0562
58494 ENSG00000285734 novel transcript, antisense to CACNA1C -0.0562

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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