Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM1677800

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM1677800


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7000000000000000000000-766Sequence Read ArchiveSRP050499SRP050499_T328The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsTranscriptomePrimordial germ cellHumanEarly embryonic tissueRNA-seqHiSeq 2500Sequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 121.1128
2 ENSG00000156508 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 96.8502
3 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 89.1800
4 ENSG00000089157 RPLP0 ribosomal protein lateral stalk subunit P0 45.6497
5 ENSG00000198034 RPS4X ribosomal protein S4 X-linked 37.1605
6 ENSG00000137154 RPS6 ribosomal protein S6 36.3190
7 ENSG00000198888 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 35.2835
8 ENSG00000174444 RPL4 ribosomal protein L4 34.8505
9 ENSG00000168028 RPSA ribosomal protein SA 34.2499
10 ENSG00000198786 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 34.2329

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285737 LINC02680 long intergenic non-protein coding RNA 2680 -0.0739
58502 ENSG00000285736 Novel transcript -0.0739
58501 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.0739
58500 ENSG00000285734 novel transcript, antisense to CACNA1C -0.0739
58499 ENSG00000285733 novel protein -0.0739
58498 ENSG00000285732 novel transcript, antisense to ABCD2 -0.0739
58497 ENSG00000285731 Novel transcript, antisense to TBC1D5 -0.0739
58496 ENSG00000285730 novel transcript -0.0739
58495 ENSG00000285729 novel transcript -0.0739
58494 ENSG00000285728 novel transcript, antisense to PPIH -0.0739

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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