Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome: GSM967513

Expression ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type


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7020001000000000000000-715Sequence Read ArchiveSRP014428SRP014428_T6Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cellsTranscriptomeEmbryonic stem cell (Inner cell mass)HumanEarly embryonic tissueRNA-seqGenome Analyzer IIxSequence

Histogram (Expression count)

Top 10 up-regulated genes

RankENSGGene symbolDescriptionZ-score
1 ENSG00000210082 MT-RNR2 mitochondrially encoded 16S rRNA 116.8452
2 ENSG00000198804 MT-CO1 mitochondrially encoded cytochrome c oxidase I 63.6969
3 ENSG00000198712 MT-CO2 mitochondrially encoded cytochrome c oxidase II 57.8113
4 ENSG00000198938 MT-CO3 mitochondrially encoded cytochrome c oxidase III 57.4836
5 ENSG00000198886 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 47.0144
6 ENSG00000075624 ACTB actin beta 44.5245
7 ENSG00000203396 WDR45-like (WDR45L) pseudogene 36.3512
8 ENSG00000111640 GAPDH glyceraldehyde-3-phosphate dehydrogenase 34.6415
9 ENSG00000198727 MT-CYB mitochondrially encoded cytochrome b 32.4388
10 ENSG00000137818 RPLP1 ribosomal protein lateral stalk subunit P1 26.3304

Bottom 10 down-regulated genes

RankENSGGene symbolDescriptionZ-score
58503 ENSG00000285735 LINC02717 long intergenic non-protein coding RNA 2717 -0.1104
58502 ENSG00000285734 novel transcript, antisense to CACNA1C -0.1104
58501 ENSG00000285733 novel protein -0.1104
58500 ENSG00000285732 novel transcript, antisense to ABCD2 -0.1104
58499 ENSG00000285731 Novel transcript, antisense to TBC1D5 -0.1104
58498 ENSG00000285729 novel transcript -0.1104
58497 ENSG00000285727 novel transcript -0.1104
58496 ENSG00000285726 novel transcript -0.1104
58495 ENSG00000285725 novel transcript -0.1104
58494 ENSG00000285724 novel transcript -0.1104

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionZ-score

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