Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Transcriptome

No.Project IdNumber Of SamplesProjectAssaySource CellTechnologyData
Project TitleOrganization NameAssay TypeSource Cell TypeSource OrganismAssay TechnologyData Type
1CAP0000021571Ischaemic sensitivity of human tissue by single cell RNA seqWellcome Trust Sanger InstituteTranscriptomeSpleen cellHumanRNA-SeqSequence
2SRP01442813Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cellsKarolinska InstitutetTranscriptomeLeucocyteHumanRNA-seqSequence
3SRP01852544Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-SequencingHuman Genetics, UCLATranscriptomeBlood cellHumanRNA-seqSequence
4SRP020490291Single-cell RNA-Seq reveals dynamic, random monoallelic gene expression in mammalian cellsKarolinska InstitutetTranscriptome16-cell embryo cell (16-cell embryo)MouseRNA-SeqSequence
5SRP022764288Quantitative single-cell RNA-seqKarolinska InstitutetTranscriptomeEmbryonic stem cellMouseRNA-SeqSequence
6SRP033135316Pseudo-temporal ordering of individual cells reveals regulators of differentiationStem Cell and Regenerative Biology, Harvard UniversityTranscriptomeMyoblast_T0 (Skeletal muscle)HumanRNA-seqSequence
7SRP03313924Transcriptome In Vivo Analysis (TIVA) of spatially defined single cells in intact live mouse and human brain tissueUniversity of PennsylvaniaTranscriptomeNeuron (Cerebral cortex)MouseRNA-seqSequence
8SRP033209198High throughput quantitative whole transcriptome analysis of distal mouse lung epithelial cells from various developmental stages (E14.5, E16.5, E18.5 and adult)Stanford UniversityTranscriptomeType II pneumocyte (Distal lung epithelium)MouseRNA-seqSequence
9SRP03471244Characterization of differentiating adipose cells by high-throughput single-cell Harvard University, HSCRBTranscriptomeAdipose Derived Stem CellHumanRNA-seqSequence
10SRP03532628Massively parallel single-cell RNA-Seq for dissecting cell type and cell state compositionsWeizmann Institute of ScienceTranscriptomeDendritic cellMouseRNA-seqSequence
11SRP0435132Single Cell RNAseq data and PacBio amplicon sequencing dataTranscriptomeB cell, IgM expressing HumanRNA-seqSequence
12SRP045794251Identification of subset-specific dendritic cell progenitors reveals early commitment in the bone marrowSingapore Immunology NetworkTranscriptomeCDP_sorted_CD45+_Lin-_MHC2-_CD11c-_FLT3+_CD115+_CD117intMouseRNA-SeqSequence
13SRP04883834Single-Cell mRNA Sequencing Reveals Rare Intestinal Cell TypesMax Planck Institute of Immunobiology and EpigeneticsTranscriptomeSingle cell from whole intestinal organoids (Intestinal gland)MouseRNA-SeqSequence
14SRP050499328The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ CellsBiodynamics Optical Imaging Center (BIOPIC), Peking UniversityTranscriptomePrimordial germ cellHumanRNA-seqSequence
15SRP05542591Intrinsic age-dependent changes and cell-cell contacts regulate nephron progenitor lifespanCincinnati Children's HospitalTranscriptomeNephron progenitorMouseRNA-SeqSequence
16SRP0554409Single Cell Analysis Reveals Unexpected Transcriptional Heterogeneity of Neural Progenitors in the Developing Human CortexBoston Children's HospitalTranscriptomeRadial glia cell (Cerebral cortex)HumanRNA-seqSequence
17SRP05581086Single-Cell RNA-seq Defines the Three Cell Lineages of the Human BlastocystCrick InstituteTranscriptomeTrophectodermHumanRNA-SeqSequence
18SRP057196466A survey of human brain transcriptome diversity at the single cell levelDep of Biosciences and Nutrition, Karolinska InstituteTranscriptomeCerebral cortex cell (Cerebral cortex (temporal lobe))HumanRNA-seqSequence
19SRP05954915Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusionUniversity of Minnesota-Twin CitiesTranscriptomeMesenchymal Stem Cell (MSC)MouseRNA-SeqSequence
20SRP05994014Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse developmentUniversity of CambridgeTranscriptomeEpiblast cellMouseRNA-SeqSequence
21SRP06118516Single-cell RNA-seq of bone marrow-derived mesenchymal stem cells reveals unique profiles of lineage primingUniversity of Minnesota-Twin CitiesTranscriptomeMesenchymal stem cell (MSC)MouseRNA-SeqSequence
22SRP0619021469Adult mouse cortical cell taxonomy by single cell transcriptomicsAllen Institute for Brain ScienceTranscriptomeVip Mybpc1 (Cerebral cortex, VISp, all)MouseRNA-SeqSequence
23SRP06217745Fixed single-cell transcriptomic characterization of human radial glial diversityAllen Institute for Brain ScienceTranscriptomeEmbryonic stem cell (Inner cell mass)HumanRNA-SeqSequence
24SRP06446464Single-cell transcriptomics reveals unique features of human pancreatic islet cell subtypesCeMM Research Center for Molecular Medicine of the Austrian Academy of SciencesTranscriptomePancreatic islet cell (Pancreatic islet)HumanRNA-SeqSequence
25SRP067577217Systematic reconstruction of molecular cascades regulating growth plate development using single-cell RNA-seqTsinghua universityTranscriptomeChondrogenic cell (Bone, tibia growth plate)MouseRNA-SeqSequence
26SRP06766124Distinct routes of lineage development reshape the human blood hierarchy across ontogenyUniversity Health Network, University of TorontoTranscriptomeCMP++ Myeloid stem cell (CFU-GEMM, CMP) (Cord blood)HumanRNA-Seq, SMARTseqSequence
27SRP06789213Single-cell RNA-seq reveals distinct maturation stages of the Paneth cell lineageHubrecht InstituteTranscriptomeLgr5-positive intestinal cell (CBC cell)MouseRNA-SeqSequence
28SRP06858623Single-cell RNA-seq of sorted and micro-dissected mouse bone marrow cellsHubrecht InstituteTranscriptomeBone marrow cellMouseRNA-SeqSequence
29SRP070425622Use of the Fluidigm C1 platform for RNA sequencing of single mouse pancreatic islet cellsRegeneron Pharmaceuticals, Inc.TranscriptomePancreatic islet cell (Pancreatic islet)MouseRNA-SeqSequence
30SRP093634 547A single-cell transcriptomic analysis reveals precise pathways and regulatory mechanisms underlying hepatoblast differentiationPeking UniversityTranscriptomeHepatocyteMouseRNA-SeqSequence
31SRP1259548Mapping human pluripotent stem cell differentiation pathways via high throughput single-cell RNA-sequencingZhejiang UniversityTranscriptomeEmbryonic stem cell (Inner cell mass)HumanRNA-SeqSequence